Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.3■□□□□ 0.2
LIMD1Q9UGP4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 MIR4741-201ENST00000579822 90 ntBASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AL008638.5-201ENST00000623814 1298 ntBASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMD1Q9UGP4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AC006001.1-201ENST00000325130 474 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 FNTAP2-201ENST00000430308 634 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AL591846.1-201ENST00000451736 433 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AC025279.2-201ENST00000569730 653 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 RN7SL275P-201ENST00000582762 335 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms