Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 VDAC1P7-201ENST00000462417 847 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC120045.2-201ENST00000567334 178 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC000095.1-201ENST00000603208 874 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 MIR6805-201ENST00000615055 62 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC068418.2-201ENST00000577309 3703 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 LINC02447-202ENST00000501888 2146 ntBASIC14.36□□□□□ -0.11
LRFN1Q9P244 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 AP003680.1-201ENST00000598970 3660 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 AL133267.1-201ENST00000398220 340 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 ACTG1P3-201ENST00000431775 1114 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 KRT43P-201ENST00000434019 910 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 TDH-203ENST00000531764 1110 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 MIR4313-201ENST00000580760 101 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 BTNL10-201ENST00000595971 695 ntBASIC14.35□□□□□ -0.11
LRFN1Q9P244 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LRFN1Q9P244 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LRFN1Q9P244 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LRFN1Q9P244 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.34□□□□□ -0.11
LRFN1Q9P244 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms