Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
COL20A1Q9P218 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 AC008687.7-202ENST00000637404 953 ntBASIC17.5■□□□□ 0.39
COL20A1Q9P218 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL20A1Q9P218 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL20A1Q9P218 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
COL20A1Q9P218 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.5■□□□□ 0.39
COL20A1Q9P218 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL20A1Q9P218 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AL139094.1-201ENST00000405549 1188 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AC114812.1-204ENST00000449669 728 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AC004066.1-201ENST00000502488 802 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 SAMD11P1-201ENST00000571429 661 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AC009542.2-202ENST00000619004 1067 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 AL645728.2-202ENST00000641679 227 ntBASIC17.49■□□□□ 0.39
COL20A1Q9P218 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL20A1Q9P218 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL20A1Q9P218 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 ACTBP11-201ENST00000436287 1126 ntBASIC17.48■□□□□ 0.39
COL20A1Q9P218 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.48■□□□□ 0.39
COL20A1Q9P218 AC138951.2-201ENST00000623455 1161 ntBASIC17.48■□□□□ 0.39
COL20A1Q9P218 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 CICP11-201ENST00000434745 2827 ntBASIC17.48■□□□□ 0.39
COL20A1Q9P218 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms