Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PRYP6-201ENST00000514804 343 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AP001005.1-201ENST00000571755 1248 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AL031008.1-201ENST00000619963 541 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 BCAR1-209ENST00000546196 1340 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AL589702.1-201ENST00000641229 1509 ntBASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AC092474.2-201ENST00000424288 719 ntBASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 MIR4321-201ENST00000592276 80 ntBASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms