Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 HIST1H2APS2-201ENST00000454426 370 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 CISD2-202ENST00000503643 808 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 AC004466.2-201ENST00000614749 516 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 LINC01165-201ENST00000445190 1623 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 RPL35P9-201ENST00000446059 350 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC080013.5-201ENST00000607044 679 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC020904.3-201ENST00000624199 442 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AL158070.2-201ENST00000623713 1621 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC244394.1-201ENST00000435000 1665 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 DKKL1P1-201ENST00000400550 698 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC012441.2-201ENST00000444843 739 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC092612.1-201ENST00000514501 998 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.43■□□□□ 0.06
TTC28Q96AY4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 AL008718.2-201ENST00000609206 1313 ntBASIC15.43■□□□□ 0.06
TTC28Q96AY4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TTC28Q96AY4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 AC010141.1-201ENST00000411585 623 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ABHD17AP9-201ENST00000561925 548 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ZNF436-AS1-201ENST00000335648 2547 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 INE2-201ENST00000630399 1874 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms