Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC004461.1-201ENST00000412461 403 ntBASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AL627223.1-201ENST00000416693 442 ntBASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GPS2P2-201ENST00000430745 888 ntBASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC003101.2-201ENST00000612557 442 ntBASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 AC026748.1-201ENST00000624349 3251 ntBASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ATG4AQ8WYN0 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 AC084364.1-201ENST00000551967 1556 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 ZBED1P1-201ENST00000502364 1930 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 AC005829.1-201ENST00000570002 483 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 MIR4469-201ENST00000583919 79 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 AL133215.2-201ENST00000609242 977 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ATG4AQ8WYN0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms