Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC4P56524 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HDAC4P56524 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.36■□□□□ 0.21
HDAC4P56524 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.36■□□□□ 0.21
HDAC4P56524 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC4P56524 AC015922.1-201ENST00000421102 1152 ntBASIC16.36■□□□□ 0.21
HDAC4P56524 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.36■□□□□ 0.21
HDAC4P56524 AC093214.1-201ENST00000511688 1107 ntBASIC16.36■□□□□ 0.21
HDAC4P56524 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HDAC4P56524 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
HDAC4P56524 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 AC004461.2-201ENST00000629517 803 ntBASIC16.36■□□□□ 0.21
HDAC4P56524 AC004840.1-201ENST00000636359 365 ntBASIC16.36■□□□□ 0.21
HDAC4P56524 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
HDAC4P56524 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HDAC4P56524 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC4P56524 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC4P56524 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.36■□□□□ 0.21
HDAC4P56524 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.36■□□□□ 0.21
HDAC4P56524 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 AC022144.1-201ENST00000602255 1580 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 BASP1P1-201ENST00000430708 665 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.35■□□□□ 0.21
HDAC4P56524 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.35■□□□□ 0.21
HDAC4P56524 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.35■□□□□ 0.21
HDAC4P56524 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.35■□□□□ 0.21
HDAC4P56524 SPDYE18-201ENST00000510091 1050 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.35■□□□□ 0.21
HDAC4P56524 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.35■□□□□ 0.21
HDAC4P56524 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 DBET-201ENST00000630918 3363 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 BTBD7P1-201ENST00000447253 1453 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
HDAC4P56524 C18orf15-201ENST00000623680 2534 ntBASIC16.35■□□□□ 0.21
HDAC4P56524 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC4P56524 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC4P56524 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HDAC4P56524 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HDAC4P56524 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
HDAC4P56524 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.34■□□□□ 0.21
HDAC4P56524 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HDAC4P56524 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC4P56524 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDAC4P56524 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC4P56524 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 TOMM22P5-201ENST00000416399 439 ntBASIC16.34■□□□□ 0.21
HDAC4P56524 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC4P56524 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.34■□□□□ 0.21
HDAC4P56524 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms