Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH6P55285 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH6P55285 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH6P55285 AC092183.1-201ENST00000469884 875 ntBASIC16.29■□□□□ 0.2
CDH6P55285 SLED1-202ENST00000512051 380 ntBASIC16.29■□□□□ 0.2
CDH6P55285 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH6P55285 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CDH6P55285 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.29■□□□□ 0.2
CDH6P55285 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH6P55285 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH6P55285 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 AC091951.1-201ENST00000512854 2465 ntBASIC16.28■□□□□ 0.2
CDH6P55285 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
CDH6P55285 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH6P55285 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH6P55285 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH6P55285 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH6P55285 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH6P55285 AC010336.2-201ENST00000564226 506 ntBASIC16.28■□□□□ 0.2
CDH6P55285 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH6P55285 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH6P55285 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CDH6P55285 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH6P55285 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH6P55285 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.27■□□□□ 0.2
CDH6P55285 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH6P55285 TREML5P-201ENST00000421694 576 ntBASIC16.27■□□□□ 0.2
CDH6P55285 AC092580.3-201ENST00000430932 139 ntBASIC16.27■□□□□ 0.2
CDH6P55285 KRT18P64-201ENST00000434946 1219 ntBASIC16.27■□□□□ 0.2
CDH6P55285 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.27■□□□□ 0.2
CDH6P55285 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.27■□□□□ 0.2
CDH6P55285 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.27■□□□□ 0.2
CDH6P55285 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CDH6P55285 AL158211.3-201ENST00000607385 239 ntBASIC16.27■□□□□ 0.2
CDH6P55285 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
CDH6P55285 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 AC126365.1-201ENST00000578585 1514 ntBASIC16.27■□□□□ 0.2
CDH6P55285 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDH6P55285 AC148477.4-201ENST00000613430 1793 ntBASIC16.27■□□□□ 0.2
CDH6P55285 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH6P55285 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms