Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.88□□□□□ -0.35
CDX1P47902 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 KRT18P32-201ENST00000424695 1287 ntBASIC12.88□□□□□ -0.35
CDX1P47902 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.88□□□□□ -0.35
CDX1P47902 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.88□□□□□ -0.35
CDX1P47902 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.88□□□□□ -0.35
CDX1P47902 LINC01225-203ENST00000563550 1244 ntBASIC12.88□□□□□ -0.35
CDX1P47902 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 AC016027.1-202ENST00000607927 1699 ntBASIC12.88□□□□□ -0.35
CDX1P47902 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 AC126335.2-201ENST00000623362 4637 ntBASIC12.88□□□□□ -0.35
CDX1P47902 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 SSR4P1-203ENST00000599569 2260 ntBASIC12.87□□□□□ -0.35
CDX1P47902 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.87□□□□□ -0.35
CDX1P47902 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 AC069335.1-201ENST00000489972 472 ntBASIC12.87□□□□□ -0.35
CDX1P47902 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.87□□□□□ -0.35
CDX1P47902 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 AC093520.2-201ENST00000561830 333 ntBASIC12.87□□□□□ -0.35
CDX1P47902 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 LINC00628-201ENST00000628516 1289 ntBASIC12.87□□□□□ -0.35
CDX1P47902 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 AL390755.1-201ENST00000623716 2027 ntBASIC12.87□□□□□ -0.35
CDX1P47902 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 BEND3P1-201ENST00000421591 1944 ntBASIC12.87□□□□□ -0.35
CDX1P47902 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.87□□□□□ -0.35
CDX1P47902 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CDX1P47902 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.87□□□□□ -0.35
CDX1P47902 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CDX1P47902 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
CDX1P47902 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CDX1P47902 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CDX1P47902 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms