Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 HAUS4P1-201ENST00000406739 1145 ntBASIC18.12■□□□□ 0.49
ERCC3P19447 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 VDAC1P7-201ENST00000462417 847 ntBASIC18.12■□□□□ 0.49
ERCC3P19447 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.12■□□□□ 0.49
ERCC3P19447 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.12■□□□□ 0.49
ERCC3P19447 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 HNRNPUP1-201ENST00000554987 333 ntBASIC18.12■□□□□ 0.49
ERCC3P19447 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.12■□□□□ 0.49
ERCC3P19447 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 AL450472.2-201ENST00000603663 1156 ntBASIC18.12■□□□□ 0.49
ERCC3P19447 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 PRAL-201ENST00000624952 3286 ntBASIC18.12■□□□□ 0.49
ERCC3P19447 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
ERCC3P19447 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.12■□□□□ 0.49
ERCC3P19447 AL596087.1-201ENST00000400979 1969 ntBASIC18.11■□□□□ 0.49
ERCC3P19447 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
ERCC3P19447 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 C1QBPP1-201ENST00000400117 770 ntBASIC18.11■□□□□ 0.49
ERCC3P19447 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 AC136604.1-201ENST00000418535 575 ntBASIC18.11■□□□□ 0.49
ERCC3P19447 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.11■□□□□ 0.49
ERCC3P19447 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 ACTBP11-201ENST00000436287 1126 ntBASIC18.11■□□□□ 0.49
ERCC3P19447 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.11■□□□□ 0.49
ERCC3P19447 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.11■□□□□ 0.49
ERCC3P19447 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.11■□□□□ 0.49
ERCC3P19447 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 AC120045.2-201ENST00000567334 178 ntBASIC18.11■□□□□ 0.49
ERCC3P19447 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.11■□□□□ 0.49
ERCC3P19447 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.11■□□□□ 0.49
ERCC3P19447 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.11■□□□□ 0.49
ERCC3P19447 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ERCC3P19447 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.11■□□□□ 0.49
ERCC3P19447 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
ERCC3P19447 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ERCC3P19447 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.1■□□□□ 0.49
ERCC3P19447 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ERCC3P19447 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
ERCC3P19447 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.1■□□□□ 0.49
ERCC3P19447 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
ERCC3P19447 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.1■□□□□ 0.49
ERCC3P19447 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.1■□□□□ 0.49
ERCC3P19447 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.1■□□□□ 0.49
ERCC3P19447 CLUHP6-201ENST00000580789 941 ntBASIC18.1■□□□□ 0.49
ERCC3P19447 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.1■□□□□ 0.49
ERCC3P19447 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ERCC3P19447 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
ERCC3P19447 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms