Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 KRT18P32-201ENST00000424695 1287 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 CEND1P1-201ENST00000451006 455 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 POLD2P1-201ENST00000511220 997 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 AC007967.4-201ENST00000614700 386 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AP000845.1-201ENST00000581677 2131 ntBASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AL627223.1-201ENST00000416693 442 ntBASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SPDYE14P-201ENST00000442619 822 ntBASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AC003101.2-201ENST00000612557 442 ntBASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIMA1Q9UHB6 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.08■□□□□ 0.33
LIMA1Q9UHB6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 AC004461.1-201ENST00000412461 403 ntBASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms