Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 AC009090.5-201ENST00000624886 2285 ntBASIC16.75■□□□□ 0.27
CNTN3Q9P232 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.75■□□□□ 0.27
CNTN3Q9P232 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 RAB43P1-201ENST00000561790 589 ntBASIC16.75■□□□□ 0.27
CNTN3Q9P232 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.75■□□□□ 0.27
CNTN3Q9P232 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CNTN3Q9P232 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.75■□□□□ 0.27
CNTN3Q9P232 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 ACKR1-201ENST00000368121 1240 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 ATP5G2P4-201ENST00000442175 420 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC093433.1-201ENST00000458048 571 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 IGHV3-71-201ENST00000523324 359 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AL512343.1-201ENST00000605837 169 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC105250.1-201ENST00000509378 2057 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 AC018665.1-201ENST00000622927 1362 ntBASIC16.74■□□□□ 0.27
CNTN3Q9P232 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.74■□□□□ 0.27
CNTN3Q9P232 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CNTN3Q9P232 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 MST1L-201ENST00000442552 2185 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 AL513477.1-201ENST00000602865 2407 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms