Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 AC243591.1-201ENST00000452967 1364 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 INTS4P1-203ENST00000641008 3683 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 REXO1L1P-202ENST00000608646 1974 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
MMP28Q9H239 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
MMP28Q9H239 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 AL592424.1-201ENST00000563624 1536 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.92□□□□□ -0.18
MMP28Q9H239 AC136632.2-201ENST00000512891 861 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.92□□□□□ -0.18
MMP28Q9H239 AC105339.3-201ENST00000560043 636 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.92□□□□□ -0.18
MMP28Q9H239 AC117500.6-201ENST00000624871 588 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.92□□□□□ -0.18
MMP28Q9H239 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.92□□□□□ -0.18
MMP28Q9H239 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.92□□□□□ -0.18
MMP28Q9H239 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MMP28Q9H239 MBLAC2-202ENST00000514906 1936 ntBASIC13.92□□□□□ -0.18
MMP28Q9H239 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.92□□□□□ -0.18
MMP28Q9H239 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 PTCHD3P3-201ENST00000403073 906 ntBASIC13.91□□□□□ -0.18
MMP28Q9H239 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 HNRNPDP1-201ENST00000439535 754 ntBASIC13.91□□□□□ -0.18
MMP28Q9H239 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.91□□□□□ -0.18
MMP28Q9H239 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 TERC-201ENST00000602385 541 ntBASIC13.91□□□□□ -0.18
MMP28Q9H239 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 FAM215A-202ENST00000632077 792 ntBASIC13.91□□□□□ -0.18
MMP28Q9H239 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms