Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
USP47Q96K76 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC21.71■■□□□ 1.07
USP47Q96K76 AL109954.1-202ENST00000564051 2148 ntBASIC21.71■■□□□ 1.07
USP47Q96K76 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 FES-204ENST00000414248 2327 ntTSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USP47Q96K76 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USP47Q96K76 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USP47Q96K76 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USP47Q96K76 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 U91328.1-201ENST00000437528 223 ntBASIC21.71■■□□□ 1.07
USP47Q96K76 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.71■■□□□ 1.07
USP47Q96K76 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 USP32P1-208ENST00000506594 1164 ntBASIC21.71■■□□□ 1.07
USP47Q96K76 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
USP47Q96K76 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 SAMD11P1-201ENST00000571429 661 ntBASIC21.71■■□□□ 1.07
USP47Q96K76 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC21.71■■□□□ 1.07
USP47Q96K76 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC21.71■■□□□ 1.07
USP47Q96K76 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.71■■□□□ 1.07
USP47Q96K76 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC21.71■■□□□ 1.07
USP47Q96K76 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP47Q96K76 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
USP47Q96K76 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC21.7■■□□□ 1.07
USP47Q96K76 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
USP47Q96K76 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
USP47Q96K76 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
USP47Q96K76 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC21.7■■□□□ 1.07
USP47Q96K76 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 AC148477.4-201ENST00000613430 1793 ntBASIC21.7■■□□□ 1.06
USP47Q96K76 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC21.7■■□□□ 1.06
USP47Q96K76 RNU1-114P-201ENST00000365297 166 ntBASIC21.7■■□□□ 1.06
USP47Q96K76 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
USP47Q96K76 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 TTTY23B-201ENST00000442790 549 ntBASIC21.7■■□□□ 1.06
USP47Q96K76 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC21.7■■□□□ 1.06
USP47Q96K76 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC21.7■■□□□ 1.06
USP47Q96K76 FUZ-207ENST00000526575 482 ntTSL 4 BASIC21.7■■□□□ 1.06
USP47Q96K76 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC21.7■■□□□ 1.06
USP47Q96K76 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.7■■□□□ 1.06
USP47Q96K76 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.7■■□□□ 1.06
USP47Q96K76 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC21.7■■□□□ 1.06
USP47Q96K76 AC008735.3-201ENST00000596646 500 ntBASIC21.7■■□□□ 1.06
USP47Q96K76 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP47Q96K76 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC21.7■■□□□ 1.06
USP47Q96K76 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC21.7■■□□□ 1.06
USP47Q96K76 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP47Q96K76 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 CELP-203ENST00000624767 2414 ntTSL 5 BASIC21.69■■□□□ 1.06
USP47Q96K76 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
USP47Q96K76 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP47Q96K76 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC21.69■■□□□ 1.06
USP47Q96K76 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC21.69■■□□□ 1.06
USP47Q96K76 METTL26-214ENST00000614890 801 ntTSL 3 BASIC21.69■■□□□ 1.06
USP47Q96K76 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC21.69■■□□□ 1.06
USP47Q96K76 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms