Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 MIR648-201ENST00000385046 94 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 U91328.1-201ENST00000437528 223 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 RN7SL837P-201ENST00000463010 287 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AC036164.1-201ENST00000570544 333 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 TMEM261P1-201ENST00000604899 340 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 WFDC1-204ENST00000613603 549 ntBASIC14.58□□□□□ -0.08
BEST3Q8N1M1 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
BEST3Q8N1M1 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 KRT18P64-201ENST00000434946 1219 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 RN7SL399P-201ENST00000471648 279 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 HNRNPUP1-201ENST00000554987 333 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AL391069.4-201ENST00000609583 481 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 CDC14C-201ENST00000428251 1719 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AL136379.1-201ENST00000623471 2642 ntBASIC14.57□□□□□ -0.08
BEST3Q8N1M1 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
BEST3Q8N1M1 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms