Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 AL157414.3-201ENST00000624276 1954 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
PRKDCP78527 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC10.94□□□□□ -0.66
PRKDCP78527 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 AC055811.3-201ENST00000584952 686 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC10.94□□□□□ -0.66
PRKDCP78527 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 REXO1L5P-201ENST00000622260 2098 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 BX088651.3-201ENST00000418155 352 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 RN7SL494P-201ENST00000461517 304 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 DUX4L47-201ENST00000566374 394 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC10.94□□□□□ -0.66
PRKDCP78527 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 RN7SKP109-201ENST00000410592 316 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 AC023906.1-201ENST00000486386 453 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC10.93□□□□□ -0.66
PRKDCP78527 AC005962.1-201ENST00000584100 773 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
PRKDCP78527 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 FKBP4P6-201ENST00000457486 1332 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
PRKDCP78527 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC10.93□□□□□ -0.66
PRKDCP78527 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC10.93□□□□□ -0.66
PRKDCP78527 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 HLA-DQB1-202ENST00000399079 1501 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 MST1L-201ENST00000442552 2185 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC10.93□□□□□ -0.66
PRKDCP78527 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC10.93□□□□□ -0.66
PRKDCP78527 AC007952.4-201ENST00000573866 637 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 AP005264.6-204ENST00000588436 719 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC10.93□□□□□ -0.66
PRKDCP78527 AC010503.4-201ENST00000615487 688 ntBASIC10.93□□□□□ -0.66
PRKDCP78527 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
PRKDCP78527 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC10.93□□□□□ -0.66
PRKDCP78527 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
PRKDCP78527 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC10.93□□□□□ -0.66
PRKDCP78527 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 MDH2-205ENST00000461263 648 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC068867.1-201ENST00000559855 150 ntBASIC10.92□□□□□ -0.66
PRKDCP78527 AC020910.5-201ENST00000623668 1865 ntBASIC10.92□□□□□ -0.66
PRKDCP78527 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC10.92□□□□□ -0.66
PRKDCP78527 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
PRKDCP78527 RNLS-203ENST00000437752 525 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC10.92□□□□□ -0.66
PRKDCP78527 AC006483.2-201ENST00000609813 515 ntBASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms