Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 TUBB3P1-201ENST00000405796 1332 ntBASIC12.68□□□□□ -0.38
CX3CL1P78423 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CX3CL1P78423 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.68□□□□□ -0.38
CX3CL1P78423 METTL21AP1-201ENST00000438852 635 ntBASIC12.68□□□□□ -0.38
CX3CL1P78423 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.68□□□□□ -0.38
CX3CL1P78423 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.68□□□□□ -0.38
CX3CL1P78423 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.68□□□□□ -0.38
CX3CL1P78423 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.68□□□□□ -0.38
CX3CL1P78423 AL133215.2-201ENST00000609242 977 ntBASIC12.68□□□□□ -0.38
CX3CL1P78423 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.68□□□□□ -0.38
CX3CL1P78423 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.68□□□□□ -0.38
CX3CL1P78423 AC093028.1-201ENST00000622998 982 ntBASIC12.68□□□□□ -0.38
CX3CL1P78423 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.68□□□□□ -0.38
CX3CL1P78423 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.68□□□□□ -0.38
CX3CL1P78423 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
CX3CL1P78423 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.68□□□□□ -0.38
CX3CL1P78423 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CX3CL1P78423 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.67□□□□□ -0.38
CX3CL1P78423 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC018892.3-201ENST00000623986 2499 ntBASIC12.67□□□□□ -0.38
CX3CL1P78423 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.67□□□□□ -0.38
CX3CL1P78423 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CX3CL1P78423 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.67□□□□□ -0.38
CX3CL1P78423 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.67□□□□□ -0.38
CX3CL1P78423 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.67□□□□□ -0.38
CX3CL1P78423 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AL589739.1-201ENST00000607720 493 ntBASIC12.67□□□□□ -0.38
CX3CL1P78423 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.67□□□□□ -0.38
CX3CL1P78423 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CX3CL1P78423 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.67□□□□□ -0.38
CX3CL1P78423 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CX3CL1P78423 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms