Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
RPL39P62891 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RPL39P62891 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RPL39P62891 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RPL39P62891 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
RPL39P62891 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC11.14□□□□□ -0.63
RPL39P62891 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
RPL39P62891 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC11.13□□□□□ -0.63
RPL39P62891 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC11.13□□□□□ -0.63
RPL39P62891 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC11.13□□□□□ -0.63
RPL39P62891 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.13□□□□□ -0.63
RPL39P62891 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 AL121772.3-201ENST00000610840 674 ntBASIC11.13□□□□□ -0.63
RPL39P62891 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 REXO1L1P-202ENST00000608646 1974 ntBASIC11.13□□□□□ -0.63
RPL39P62891 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
RPL39P62891 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.13□□□□□ -0.63
RPL39P62891 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
RPL39P62891 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 PMS2P7-201ENST00000506558 1336 ntBASIC11.12□□□□□ -0.63
RPL39P62891 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.12□□□□□ -0.63
RPL39P62891 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC11.12□□□□□ -0.63
RPL39P62891 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
RPL39P62891 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms