Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
FOXA3P55318 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 AC012569.1-201ENST00000591191 1524 ntBASIC11.84□□□□□ -0.51
FOXA3P55318 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA3P55318 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
FOXA3P55318 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
FOXA3P55318 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
FOXA3P55318 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 AL031595.1-201ENST00000623969 4709 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA3P55318 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA3P55318 AP002383.4-201ENST00000442518 975 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 LINC00265-3P-201ENST00000447588 903 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 AC106795.1-205ENST00000512851 1056 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA3P55318 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC11.83□□□□□ -0.52
FOXA3P55318 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 AC074051.2-201ENST00000565115 352 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 MIR4321-201ENST00000592276 80 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 BEND3P1-201ENST00000421591 1944 ntBASIC11.83□□□□□ -0.52
FOXA3P55318 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
FOXA3P55318 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA3P55318 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
FOXA3P55318 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA3P55318 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms