Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXA1P49639 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.11□□□□□ -0.31
HOXA1P49639 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.11□□□□□ -0.31
HOXA1P49639 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HOXA1P49639 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HOXA1P49639 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
HOXA1P49639 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXA1P49639 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXA1P49639 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.1□□□□□ -0.31
HOXA1P49639 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 AL445228.2-201ENST00000605589 952 ntBASIC13.1□□□□□ -0.31
HOXA1P49639 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 AC005593.1-201ENST00000624894 515 ntBASIC13.1□□□□□ -0.31
HOXA1P49639 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.1□□□□□ -0.31
HOXA1P49639 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXA1P49639 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXA1P49639 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXA1P49639 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 AKR1C7P-201ENST00000305623 895 ntBASIC13.09□□□□□ -0.31
HOXA1P49639 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HOXA1P49639 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 KRT18P27-201ENST00000427733 1299 ntBASIC13.09□□□□□ -0.31
HOXA1P49639 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.09□□□□□ -0.31
HOXA1P49639 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.09□□□□□ -0.31
HOXA1P49639 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.09□□□□□ -0.31
HOXA1P49639 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 AL031055.1-201ENST00000606362 631 ntBASIC13.09□□□□□ -0.31
HOXA1P49639 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.09□□□□□ -0.31
HOXA1P49639 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 PGM5P2-202ENST00000637225 1043 ntBASIC13.09□□□□□ -0.31
HOXA1P49639 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HOXA1P49639 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms