Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 KRT8P29-201ENST00000420409 1371 ntBASIC15.4■□□□□ 0.06
CXCL12P48061 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 AL354877.1-201ENST00000424412 413 ntBASIC15.4■□□□□ 0.06
CXCL12P48061 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CXCL12P48061 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.4■□□□□ 0.06
CXCL12P48061 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.4■□□□□ 0.06
CXCL12P48061 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 KRT8P14-201ENST00000414254 1442 ntBASIC15.4■□□□□ 0.06
CXCL12P48061 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.4■□□□□ 0.06
CXCL12P48061 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CXCL12P48061 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.4■□□□□ 0.06
CXCL12P48061 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CXCL12P48061 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CXCL12P48061 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CXCL12P48061 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.39■□□□□ 0.05
CXCL12P48061 HIST2H2BB-201ENST00000449108 381 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.39■□□□□ 0.05
CXCL12P48061 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.39■□□□□ 0.05
CXCL12P48061 AC100850.1-201ENST00000506768 649 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 AC106794.1-201ENST00000506935 792 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 AC024681.1-201ENST00000521917 487 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
CXCL12P48061 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.39■□□□□ 0.05
CXCL12P48061 AL645939.5-201ENST00000606834 243 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CXCL12P48061 AC007787.1-201ENST00000588095 1583 ntBASIC15.39■□□□□ 0.05
CXCL12P48061 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.39■□□□□ 0.05
CXCL12P48061 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.39■□□□□ 0.05
CXCL12P48061 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CXCL12P48061 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 AC008132.1-202ENST00000342005 1389 ntBASIC15.38■□□□□ 0.05
CXCL12P48061 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.38■□□□□ 0.05
CXCL12P48061 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CXCL12P48061 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
CXCL12P48061 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 DPM3-202ENST00000368399 517 ntBASIC15.38■□□□□ 0.05
CXCL12P48061 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.38■□□□□ 0.05
CXCL12P48061 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.38■□□□□ 0.05
CXCL12P48061 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.38■□□□□ 0.05
CXCL12P48061 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CXCL12P48061 AL596276.2-201ENST00000447525 331 ntBASIC15.38■□□□□ 0.05
CXCL12P48061 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.38■□□□□ 0.05
CXCL12P48061 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.38■□□□□ 0.05
CXCL12P48061 NUP210P1-202ENST00000504322 710 ntBASIC15.38■□□□□ 0.05
CXCL12P48061 AL391280.1-201ENST00000506969 1062 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms