Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.9□□□□□ -0.34
CDX1P47902 AC025678.2-201ENST00000562061 970 ntBASIC12.9□□□□□ -0.34
CDX1P47902 AL109954.1-202ENST00000564051 2148 ntBASIC12.9□□□□□ -0.34
CDX1P47902 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.9□□□□□ -0.34
CDX1P47902 AC009093.7-201ENST00000623853 1223 ntBASIC12.9□□□□□ -0.34
CDX1P47902 AC008267.7-201ENST00000624570 1194 ntBASIC12.9□□□□□ -0.34
CDX1P47902 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
CDX1P47902 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CDX1P47902 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
CDX1P47902 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 AL645939.2-201ENST00000427340 991 ntBASIC12.89□□□□□ -0.35
CDX1P47902 SPCS2P4-201ENST00000436160 681 ntBASIC12.89□□□□□ -0.35
CDX1P47902 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.89□□□□□ -0.35
CDX1P47902 AC004449.1-201ENST00000564240 433 ntBASIC12.89□□□□□ -0.35
CDX1P47902 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.89□□□□□ -0.35
CDX1P47902 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.89□□□□□ -0.35
CDX1P47902 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 AC084121.4-201ENST00000641598 221 ntBASIC12.89□□□□□ -0.35
CDX1P47902 AF228730.8-201ENST00000642140 221 ntBASIC12.89□□□□□ -0.35
CDX1P47902 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
CDX1P47902 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC12.89□□□□□ -0.35
CDX1P47902 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 AL391256.1-201ENST00000443260 1855 ntBASIC12.89□□□□□ -0.35
CDX1P47902 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.89□□□□□ -0.35
CDX1P47902 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CDX1P47902 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.88□□□□□ -0.35
CDX1P47902 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CDX1P47902 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CDX1P47902 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
CDX1P47902 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC12.88□□□□□ -0.35
CDX1P47902 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms