Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.19■□□□□ 0.66
COL5A3P25940 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL5A3P25940 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC19.19■□□□□ 0.66
COL5A3P25940 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL5A3P25940 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL5A3P25940 AC006335.1-201ENST00000445200 547 ntBASIC19.19■□□□□ 0.66
COL5A3P25940 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL5A3P25940 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC19.19■□□□□ 0.66
COL5A3P25940 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC19.19■□□□□ 0.66
COL5A3P25940 SNORD3B-2-202ENST00000571722 791 ntBASIC19.19■□□□□ 0.66
COL5A3P25940 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19.19■□□□□ 0.66
COL5A3P25940 AC012044.1-201ENST00000603431 297 ntBASIC19.19■□□□□ 0.66
COL5A3P25940 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC19.19■□□□□ 0.66
COL5A3P25940 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 AMT-204ENST00000427987 1646 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 KLF2P1-201ENST00000447438 1042 ntBASIC19.18■□□□□ 0.66
COL5A3P25940 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
COL5A3P25940 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.18■□□□□ 0.66
COL5A3P25940 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 RPL35-206ENST00000629845 340 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 KRT8P21-201ENST00000430398 1491 ntBASIC19.18■□□□□ 0.66
COL5A3P25940 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A3P25940 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL5A3P25940 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A3P25940 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A3P25940 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.17■□□□□ 0.66
COL5A3P25940 NDUFS6P1-201ENST00000485187 316 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 AC026434.2-201ENST00000506094 1078 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 CTBP2P4-201ENST00000513884 920 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
COL5A3P25940 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC138894.2-201ENST00000602838 371 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC006453.1-201ENST00000636037 1257 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 AC011491.1-203ENST00000637688 543 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
COL5A3P25940 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 AK6-201ENST00000380818 1183 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 RPSAP31-201ENST00000416648 895 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 RN7SL67P-201ENST00000492147 296 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC090857.1-201ENST00000527400 390 ntBASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms