Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
TPM1P09493 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.33■□□□□ 0.37
TPM1P09493 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
TPM1P09493 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.37
TPM1P09493 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 AC004987.2-201ENST00000395959 1148 ntBASIC17.33■□□□□ 0.36
TPM1P09493 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.33■□□□□ 0.36
TPM1P09493 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.33■□□□□ 0.36
TPM1P09493 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.33■□□□□ 0.36
TPM1P09493 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.33■□□□□ 0.36
TPM1P09493 MIR4313-201ENST00000580760 101 ntBASIC17.33■□□□□ 0.36
TPM1P09493 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.33■□□□□ 0.36
TPM1P09493 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TPM1P09493 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TPM1P09493 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TPM1P09493 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.33■□□□□ 0.36
TPM1P09493 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TPM1P09493 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM1P09493 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.32■□□□□ 0.36
TPM1P09493 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM1P09493 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.32■□□□□ 0.36
TPM1P09493 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 MIR1224-201ENST00000408193 85 ntBASIC17.32■□□□□ 0.36
TPM1P09493 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM1P09493 UNC93B7-201ENST00000509439 705 ntBASIC17.32■□□□□ 0.36
TPM1P09493 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.32■□□□□ 0.36
TPM1P09493 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.32■□□□□ 0.36
TPM1P09493 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.32■□□□□ 0.36
TPM1P09493 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TPM1P09493 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM1P09493 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.32■□□□□ 0.36
TPM1P09493 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TPM1P09493 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TPM1P09493 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TPM1P09493 AC087386.2-201ENST00000623212 4637 ntBASIC17.32■□□□□ 0.36
TPM1P09493 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms