Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
VIMP08670 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
VIMP08670 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.82■□□□□ 0.12
VIMP08670 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.82■□□□□ 0.12
VIMP08670 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.82■□□□□ 0.12
VIMP08670 AP002469.2-201ENST00000531724 424 ntBASIC15.82■□□□□ 0.12
VIMP08670 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.82■□□□□ 0.12
VIMP08670 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.82■□□□□ 0.12
VIMP08670 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.82■□□□□ 0.12
VIMP08670 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.82■□□□□ 0.12
VIMP08670 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.82■□□□□ 0.12
VIMP08670 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VIMP08670 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VIMP08670 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VIMP08670 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VIMP08670 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC15.81■□□□□ 0.12
VIMP08670 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
VIMP08670 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 RCN1P1-201ENST00000400413 996 ntBASIC15.81■□□□□ 0.12
VIMP08670 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.81■□□□□ 0.12
VIMP08670 BEND3P1-201ENST00000421591 1944 ntBASIC15.81■□□□□ 0.12
VIMP08670 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
VIMP08670 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC15.81■□□□□ 0.12
VIMP08670 AC132008.2-207ENST00000454517 770 ntBASIC15.81■□□□□ 0.12
VIMP08670 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.81■□□□□ 0.12
VIMP08670 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.81■□□□□ 0.12
VIMP08670 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.81■□□□□ 0.12
VIMP08670 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.81■□□□□ 0.12
VIMP08670 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.81■□□□□ 0.12
VIMP08670 AC006504.4-201ENST00000592118 1568 ntBASIC15.81■□□□□ 0.12
VIMP08670 AC099336.1-202ENST00000602961 463 ntBASIC15.81■□□□□ 0.12
VIMP08670 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.81■□□□□ 0.12
VIMP08670 AL928921.2-201ENST00000641325 2442 ntBASIC15.81■□□□□ 0.12
VIMP08670 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.81■□□□□ 0.12
VIMP08670 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VIMP08670 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
VIMP08670 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.8■□□□□ 0.12
VIMP08670 AP002383.4-201ENST00000442518 975 ntBASIC15.8■□□□□ 0.12
VIMP08670 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.8■□□□□ 0.12
VIMP08670 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
VIMP08670 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms