Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.94■□□□□ 0.46
COL2A1P02458 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL2A1P02458 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.94■□□□□ 0.46
COL2A1P02458 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL2A1P02458 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 PCDH8P1-201ENST00000428983 2773 ntBASIC17.93■□□□□ 0.46
COL2A1P02458 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 AC005730.2-201ENST00000564549 1184 ntBASIC17.93■□□□□ 0.46
COL2A1P02458 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.93■□□□□ 0.46
COL2A1P02458 AC138696.2-201ENST00000607376 223 ntBASIC17.93■□□□□ 0.46
COL2A1P02458 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.93■□□□□ 0.46
COL2A1P02458 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL2A1P02458 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.93■□□□□ 0.46
COL2A1P02458 AL391005.1-201ENST00000623953 2435 ntBASIC17.92■□□□□ 0.46
COL2A1P02458 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.92■□□□□ 0.46
COL2A1P02458 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.92■□□□□ 0.46
COL2A1P02458 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.92■□□□□ 0.46
COL2A1P02458 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.92■□□□□ 0.46
COL2A1P02458 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.92■□□□□ 0.46
COL2A1P02458 SERPINA13P-202ENST00000478994 924 ntBASIC17.92■□□□□ 0.46
COL2A1P02458 AC026434.2-201ENST00000506094 1078 ntBASIC17.92■□□□□ 0.46
COL2A1P02458 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 ACTG1P17-201ENST00000558391 1119 ntBASIC17.92■□□□□ 0.46
COL2A1P02458 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.92■□□□□ 0.46
COL2A1P02458 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL2A1P02458 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL2A1P02458 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.91■□□□□ 0.46
COL2A1P02458 PCDHB19P-201ENST00000570871 2371 ntBASIC17.91■□□□□ 0.46
COL2A1P02458 AC026691.1-201ENST00000602502 2017 ntBASIC17.91■□□□□ 0.46
COL2A1P02458 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.91■□□□□ 0.46
COL2A1P02458 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.91■□□□□ 0.46
COL2A1P02458 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 HIST2H2BC-201ENST00000498492 580 ntBASIC17.91■□□□□ 0.46
COL2A1P02458 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL2A1P02458 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
COL2A1P02458 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.91■□□□□ 0.46
COL2A1P02458 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.91■□□□□ 0.46
COL2A1P02458 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL2A1P02458 MST1L-201ENST00000442552 2185 ntBASIC17.91■□□□□ 0.46
COL2A1P02458 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms