Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 LINC01101-201ENST00000622953 1884 ntBASIC15.43■□□□□ 0.06
VPS4BO75351 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS4BO75351 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
VPS4BO75351 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS4BO75351 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS4BO75351 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS4BO75351 AC126365.1-201ENST00000578585 1514 ntBASIC15.43■□□□□ 0.06
VPS4BO75351 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS4BO75351 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS4BO75351 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 TCAF2P1-201ENST00000291129 2421 ntBASIC15.42■□□□□ 0.06
VPS4BO75351 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
VPS4BO75351 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 MIR661-201ENST00000384842 89 ntBASIC15.42■□□□□ 0.06
VPS4BO75351 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.42■□□□□ 0.06
VPS4BO75351 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS4BO75351 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.42■□□□□ 0.06
VPS4BO75351 AL135744.1-201ENST00000565098 629 ntBASIC15.42■□□□□ 0.06
VPS4BO75351 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SPTSSB-204ENST00000617024 1292 ntBASIC15.42■□□□□ 0.06
VPS4BO75351 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS4BO75351 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
VPS4BO75351 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS4BO75351 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VPS4BO75351 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
VPS4BO75351 KRT8P44-201ENST00000441609 1350 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
VPS4BO75351 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.41■□□□□ 0.06
VPS4BO75351 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms