Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 AL607033.1-201ENST00000623900 1599 ntBASIC16.32■□□□□ 0.2
CCDC188H7C350 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC188H7C350 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CCDC188H7C350 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC188H7C350 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC188H7C350 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC188H7C350 PDPK2P-202ENST00000562415 1191 ntBASIC16.31■□□□□ 0.2
CCDC188H7C350 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC188H7C350 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.31■□□□□ 0.2
CCDC188H7C350 AC064836.3-201ENST00000607928 673 ntBASIC16.31■□□□□ 0.2
CCDC188H7C350 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC188H7C350 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC188H7C350 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC188H7C350 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC188H7C350 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.31■□□□□ 0.2
CCDC188H7C350 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC188H7C350 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC188H7C350 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC188H7C350 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC188H7C350 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.3■□□□□ 0.2
CCDC188H7C350 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC188H7C350 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 HLA-H-201ENST00000383620 1096 ntBASIC16.3■□□□□ 0.2
CCDC188H7C350 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC188H7C350 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC188H7C350 AL691432.3-201ENST00000621860 400 ntBASIC16.3■□□□□ 0.2
CCDC188H7C350 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
CCDC188H7C350 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC188H7C350 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC188H7C350 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC188H7C350 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC188H7C350 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC188H7C350 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC188H7C350 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC188H7C350 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC188H7C350 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC188H7C350 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC188H7C350 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
CCDC188H7C350 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms