Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 FGD5P1-202ENST00000614866 2498 ntBASIC14.13□□□□□ -0.15
PTP4A1Q93096 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 HLA-H-201ENST00000383620 1096 ntBASIC14.12□□□□□ -0.15
PTP4A1Q93096 ADH5P3-201ENST00000433842 1137 ntBASIC14.12□□□□□ -0.15
PTP4A1Q93096 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 HNRNPUP1-201ENST00000554987 333 ntBASIC14.12□□□□□ -0.15
PTP4A1Q93096 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 PKD1P5-201ENST00000532415 10291 ntBASIC14.12□□□□□ -0.15
PTP4A1Q93096 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PTP4A1Q93096 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 LINC00552-201ENST00000625151 2579 ntBASIC14.12□□□□□ -0.15
PTP4A1Q93096 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
PTP4A1Q93096 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
PTP4A1Q93096 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.11□□□□□ -0.15
PTP4A1Q93096 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
PTP4A1Q93096 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.11□□□□□ -0.15
PTP4A1Q93096 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.11□□□□□ -0.15
PTP4A1Q93096 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PTP4A1Q93096 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms