Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 GHSR-202ENST00000427970 912 ntBASIC20.9■□□□□ 0.94
NPHP3Q7Z494 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC012044.1-201ENST00000603431 297 ntBASIC20.9■□□□□ 0.94
NPHP3Q7Z494 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC103691.2-201ENST00000618824 433 ntBASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC138466.3-201ENST00000619983 221 ntBASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AL162426.1-201ENST00000624141 743 ntBASIC20.9■□□□□ 0.94
NPHP3Q7Z494 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.89■□□□□ 0.94
NPHP3Q7Z494 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP3Q7Z494 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
NPHP3Q7Z494 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 ISCA2P1-201ENST00000425548 448 ntBASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AC242376.1-201ENST00000559033 726 ntBASIC20.89■□□□□ 0.93
NPHP3Q7Z494 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AL136295.7-201ENST00000619226 1200 ntBASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP3Q7Z494 AC090340.1-201ENST00000620778 4980 ntBASIC20.89■□□□□ 0.93
NPHP3Q7Z494 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 PUDPP3-201ENST00000445368 636 ntBASIC20.88■□□□□ 0.93
NPHP3Q7Z494 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 AC090164.2-201ENST00000611487 516 ntBASIC20.88■□□□□ 0.93
NPHP3Q7Z494 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.88■□□□□ 0.93
NPHP3Q7Z494 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP3Q7Z494 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 RPSAP31-201ENST00000416648 895 ntBASIC20.87■□□□□ 0.93
NPHP3Q7Z494 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms