Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 MIR6805-201ENST00000615055 62 ntBASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AC006486.2-201ENST00000624246 2199 ntBASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC144BQ3MJ40 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 U82695.1-201ENST00000635752 1889 ntBASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 RPS2P32-201ENST00000439199 892 ntBASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 AC025048.3-201ENST00000590609 569 ntBASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 AC074044.1-201ENST00000609673 707 ntBASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 AC005702.4-201ENST00000618393 416 ntBASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC144BQ3MJ40 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 HIST3H2BA-201ENST00000436555 524 ntBASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 POU5F1P6-201ENST00000466990 990 ntBASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 MIR4321-201ENST00000592276 80 ntBASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC144BQ3MJ40 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms