Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.7□□□□□ -0.38
CX3CL1P78423 CNN2P2-201ENST00000443536 909 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CL1P78423 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CL1P78423 CNN2P3-201ENST00000450201 906 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.7□□□□□ -0.38
CX3CL1P78423 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 AL136317.3-201ENST00000618497 906 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 Z92544.3-201ENST00000624747 417 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 KRT8P37-201ENST00000451609 1420 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.69□□□□□ -0.38
CX3CL1P78423 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
CX3CL1P78423 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.69□□□□□ -0.38
CX3CL1P78423 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.69□□□□□ -0.38
CX3CL1P78423 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CX3CL1P78423 AC097376.2-205ENST00000610159 5334 ntBASIC12.69□□□□□ -0.38
CX3CL1P78423 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CX3CL1P78423 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CX3CL1P78423 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms