Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 AL365209.1-201ENST00000624418 6473 ntBASIC14.51□□□□□ -0.09
RNF4P78317 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
RNF4P78317 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
RNF4P78317 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 AC092127.1-201ENST00000567093 3455 ntBASIC14.51□□□□□ -0.09
RNF4P78317 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.51□□□□□ -0.09
RNF4P78317 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.51□□□□□ -0.09
RNF4P78317 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.51□□□□□ -0.09
RNF4P78317 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.51□□□□□ -0.09
RNF4P78317 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.51□□□□□ -0.09
RNF4P78317 AL358472.5-202ENST00000641448 1267 ntBASIC14.51□□□□□ -0.09
RNF4P78317 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RNF4P78317 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 DGCR5-201ENST00000399539 862 ntBASIC14.5□□□□□ -0.09
RNF4P78317 AC098850.1-201ENST00000419919 790 ntBASIC14.5□□□□□ -0.09
RNF4P78317 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.5□□□□□ -0.09
RNF4P78317 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.5□□□□□ -0.09
RNF4P78317 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 FAM86LP-201ENST00000478302 853 ntBASIC14.5□□□□□ -0.09
RNF4P78317 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.5□□□□□ -0.09
RNF4P78317 AP005018.1-201ENST00000525475 301 ntBASIC14.5□□□□□ -0.09
RNF4P78317 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 AC015910.1-201ENST00000579400 975 ntBASIC14.5□□□□□ -0.09
RNF4P78317 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.5□□□□□ -0.09
RNF4P78317 AC000095.1-201ENST00000603208 874 ntBASIC14.5□□□□□ -0.09
RNF4P78317 MIR8072-201ENST00000614241 80 ntBASIC14.5□□□□□ -0.09
RNF4P78317 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.5□□□□□ -0.09
RNF4P78317 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
RNF4P78317 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
RNF4P78317 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
RNF4P78317 AC127383.1-201ENST00000444697 1800 ntBASIC14.5□□□□□ -0.09
RNF4P78317 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.5□□□□□ -0.09
RNF4P78317 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RNF4P78317 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.49□□□□□ -0.09
RNF4P78317 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms