Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.42■□□□□ 0.06
CXCL12P48061 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.42■□□□□ 0.06
CXCL12P48061 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.42■□□□□ 0.06
CXCL12P48061 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.42■□□□□ 0.06
CXCL12P48061 AC005730.2-201ENST00000564549 1184 ntBASIC15.42■□□□□ 0.06
CXCL12P48061 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
CXCL12P48061 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.42■□□□□ 0.06
CXCL12P48061 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 AC079336.7-201ENST00000623428 1078 ntBASIC15.42■□□□□ 0.06
CXCL12P48061 AP001002.3-201ENST00000623482 206 ntBASIC15.42■□□□□ 0.06
CXCL12P48061 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CXCL12P48061 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
CXCL12P48061 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CXCL12P48061 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 AC106886.4-201ENST00000623557 2502 ntBASIC15.41■□□□□ 0.06
CXCL12P48061 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CXCL12P48061 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 EEF1DP6-201ENST00000449232 372 ntBASIC15.41■□□□□ 0.06
CXCL12P48061 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 AC022217.1-201ENST00000521069 738 ntBASIC15.41■□□□□ 0.06
CXCL12P48061 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.41■□□□□ 0.06
CXCL12P48061 AC073413.1-201ENST00000603927 732 ntBASIC15.41■□□□□ 0.06
CXCL12P48061 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.41■□□□□ 0.06
CXCL12P48061 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.41■□□□□ 0.06
CXCL12P48061 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CXCL12P48061 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.4■□□□□ 0.06
CXCL12P48061 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CXCL12P48061 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CXCL12P48061 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.4■□□□□ 0.06
CXCL12P48061 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms