Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 AL627223.1-201ENST00000416693 442 ntBASIC12.91□□□□□ -0.34
CDX1P47902 TSEN15P1-201ENST00000423257 515 ntBASIC12.91□□□□□ -0.34
CDX1P47902 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.91□□□□□ -0.34
CDX1P47902 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.91□□□□□ -0.34
CDX1P47902 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 LINC00552-201ENST00000625151 2579 ntBASIC12.9□□□□□ -0.34
CDX1P47902 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 KRT8P39-201ENST00000396270 1433 ntBASIC12.9□□□□□ -0.34
CDX1P47902 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
CDX1P47902 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CDX1P47902 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CDX1P47902 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.9□□□□□ -0.34
CDX1P47902 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.9□□□□□ -0.34
CDX1P47902 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CDX1P47902 KRT18P34-201ENST00000488218 1270 ntBASIC12.9□□□□□ -0.34
CDX1P47902 HLA-J-203ENST00000494367 1087 ntBASIC12.9□□□□□ -0.34
CDX1P47902 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.9□□□□□ -0.34
CDX1P47902 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms