Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CIITAP33076 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.55■□□□□ 0.4
CIITAP33076 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 AC063926.2-201ENST00000623766 1308 ntBASIC17.55■□□□□ 0.4
CIITAP33076 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.55■□□□□ 0.4
CIITAP33076 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 AL512384.1-201ENST00000406683 331 ntBASIC17.55■□□□□ 0.4
CIITAP33076 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CIITAP33076 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.55■□□□□ 0.4
CIITAP33076 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.55■□□□□ 0.4
CIITAP33076 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.55■□□□□ 0.4
CIITAP33076 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.55■□□□□ 0.4
CIITAP33076 AL035252.4-201ENST00000624174 288 ntBASIC17.55■□□□□ 0.4
CIITAP33076 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CIITAP33076 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CIITAP33076 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.55■□□□□ 0.4
CIITAP33076 AL138799.1-201ENST00000448213 1675 ntBASIC17.55■□□□□ 0.4
CIITAP33076 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CIITAP33076 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CIITAP33076 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.54■□□□□ 0.4
CIITAP33076 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.54■□□□□ 0.4
CIITAP33076 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.54■□□□□ 0.4
CIITAP33076 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.54■□□□□ 0.4
CIITAP33076 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.54■□□□□ 0.4
CIITAP33076 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.54■□□□□ 0.4
CIITAP33076 AC132938.2-201ENST00000579188 680 ntBASIC17.54■□□□□ 0.4
CIITAP33076 CLUHP6-201ENST00000580789 941 ntBASIC17.54■□□□□ 0.4
CIITAP33076 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
CIITAP33076 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.54■□□□□ 0.4
CIITAP33076 CU634019.7-201ENST00000624153 1185 ntBASIC17.54■□□□□ 0.4
CIITAP33076 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 FP236241.2-201ENST00000624906 1185 ntBASIC17.54■□□□□ 0.4
CIITAP33076 AL591163.1-201ENST00000641757 987 ntBASIC17.54■□□□□ 0.4
CIITAP33076 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 TMBIM7P-203ENST00000641617 1718 ntBASIC17.54■□□□□ 0.4
CIITAP33076 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CIITAP33076 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 AC087481.3-201ENST00000602886 1894 ntBASIC17.54■□□□□ 0.4
CIITAP33076 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 SSR4P1-203ENST00000599569 2260 ntBASIC17.54■□□□□ 0.4
CIITAP33076 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CIITAP33076 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
CIITAP33076 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.53■□□□□ 0.4
CIITAP33076 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CIITAP33076 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CIITAP33076 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.53■□□□□ 0.4
CIITAP33076 AC005034.1-201ENST00000426657 489 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms