Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
BDNFP23560 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.49■□□□□ 0.23
BDNFP23560 TMEM14DP-201ENST00000422205 345 ntBASIC16.49■□□□□ 0.23
BDNFP23560 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TTTY23B-201ENST00000442790 549 ntBASIC16.49■□□□□ 0.23
BDNFP23560 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.49■□□□□ 0.23
BDNFP23560 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 AC120045.2-201ENST00000567334 178 ntBASIC16.49■□□□□ 0.23
BDNFP23560 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.49■□□□□ 0.23
BDNFP23560 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 CU634019.7-201ENST00000624153 1185 ntBASIC16.49■□□□□ 0.23
BDNFP23560 FP236241.2-201ENST00000624906 1185 ntBASIC16.49■□□□□ 0.23
BDNFP23560 AL162727.3-201ENST00000635661 2787 ntBASIC16.49■□□□□ 0.23
BDNFP23560 AC127383.1-201ENST00000444697 1800 ntBASIC16.49■□□□□ 0.23
BDNFP23560 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.49■□□□□ 0.23
BDNFP23560 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.49■□□□□ 0.23
BDNFP23560 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.48■□□□□ 0.23
BDNFP23560 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
BDNFP23560 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 C1QBPP1-201ENST00000400117 770 ntBASIC16.48■□□□□ 0.23
BDNFP23560 U91328.1-201ENST00000437528 223 ntBASIC16.48■□□□□ 0.23
BDNFP23560 AL162726.2-201ENST00000438986 1017 ntBASIC16.48■□□□□ 0.23
BDNFP23560 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.48■□□□□ 0.23
BDNFP23560 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.48■□□□□ 0.23
BDNFP23560 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
BDNFP23560 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.48■□□□□ 0.23
BDNFP23560 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.48■□□□□ 0.23
BDNFP23560 AC124283.3-201ENST00000570869 594 ntBASIC16.48■□□□□ 0.23
BDNFP23560 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 AC010319.3-201ENST00000597028 470 ntBASIC16.48■□□□□ 0.23
BDNFP23560 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.48■□□□□ 0.23
BDNFP23560 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.48■□□□□ 0.23
BDNFP23560 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BDNFP23560 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.48■□□□□ 0.23
BDNFP23560 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BDNFP23560 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
BDNFP23560 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 GK-202ENST00000378941 458 ntTSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms