Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 RPL5P21-201ENST00000404620 815 ntBASIC14.94□□□□□ -0.02
SDC1P18827 AC074338.1-201ENST00000416825 156 ntBASIC14.94□□□□□ -0.02
SDC1P18827 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.94□□□□□ -0.02
SDC1P18827 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.94□□□□□ -0.02
SDC1P18827 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.94□□□□□ -0.02
SDC1P18827 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 AP001059.3-201ENST00000619053 235 ntBASIC14.94□□□□□ -0.02
SDC1P18827 CICP23-201ENST00000605013 2741 ntBASIC14.94□□□□□ -0.02
SDC1P18827 LINC01101-201ENST00000622953 1884 ntBASIC14.94□□□□□ -0.02
SDC1P18827 AC106881.1-201ENST00000605849 3329 ntBASIC14.94□□□□□ -0.02
SDC1P18827 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 AC067930.6-201ENST00000623257 4947 ntBASIC14.94□□□□□ -0.02
SDC1P18827 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.93□□□□□ -0.02
SDC1P18827 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SDC1P18827 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 AC211486.1-202ENST00000416371 468 ntBASIC14.93□□□□□ -0.02
SDC1P18827 AL080243.2-201ENST00000418783 582 ntBASIC14.93□□□□□ -0.02
SDC1P18827 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.93□□□□□ -0.02
SDC1P18827 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.93□□□□□ -0.02
SDC1P18827 AC211476.1-201ENST00000503899 468 ntBASIC14.93□□□□□ -0.02
SDC1P18827 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
SDC1P18827 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.93□□□□□ -0.02
SDC1P18827 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.93□□□□□ -0.02
SDC1P18827 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.93□□□□□ -0.02
SDC1P18827 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.93□□□□□ -0.02
SDC1P18827 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SDC1P18827 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.93□□□□□ -0.02
SDC1P18827 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.93□□□□□ -0.02
SDC1P18827 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 CICP11-201ENST00000434745 2827 ntBASIC14.93□□□□□ -0.02
SDC1P18827 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDC1P18827 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms