Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 AL928921.2-201ENST00000641325 2442 ntBASIC13.22□□□□□ -0.29
CD74P04233 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.22□□□□□ -0.29
CD74P04233 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.22□□□□□ -0.29
CD74P04233 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CD74P04233 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.21□□□□□ -0.29
CD74P04233 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CD74P04233 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 EEF1DP4-201ENST00000446006 880 ntBASIC13.21□□□□□ -0.29
CD74P04233 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 SAPCD2P3-201ENST00000455031 850 ntBASIC13.21□□□□□ -0.29
CD74P04233 AC098859.1-201ENST00000502915 1238 ntBASIC13.21□□□□□ -0.29
CD74P04233 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.21□□□□□ -0.29
CD74P04233 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.21□□□□□ -0.29
CD74P04233 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.21□□□□□ -0.29
CD74P04233 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CD74P04233 AC097359.3-201ENST00000603982 1210 ntBASIC13.21□□□□□ -0.29
CD74P04233 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC13.21□□□□□ -0.29
CD74P04233 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.21□□□□□ -0.29
CD74P04233 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
CD74P04233 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CD74P04233 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CD74P04233 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.21□□□□□ -0.3
CD74P04233 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.21□□□□□ -0.3
CD74P04233 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.21□□□□□ -0.3
CD74P04233 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 MTHFR-210ENST00000641407 2387 ntBASIC13.21□□□□□ -0.3
CD74P04233 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CD74P04233 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.21□□□□□ -0.3
CD74P04233 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CD74P04233 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CD74P04233 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.2□□□□□ -0.3
CD74P04233 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
CD74P04233 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.2□□□□□ -0.3
CD74P04233 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CD74P04233 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CD74P04233 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
CD74P04233 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.2□□□□□ -0.3
CD74P04233 TSPY19P-201ENST00000418461 509 ntBASIC13.2□□□□□ -0.3
CD74P04233 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.2□□□□□ -0.3
CD74P04233 TSPY18P-201ENST00000441642 509 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms