Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.76□□□□□ -0.05
LDB3O75112 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 SPDYE19P-201ENST00000338590 713 ntBASIC14.76□□□□□ -0.05
LDB3O75112 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 AC236430.1-201ENST00000402231 743 ntBASIC14.76□□□□□ -0.05
LDB3O75112 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.76□□□□□ -0.05
LDB3O75112 DOC2GP-202ENST00000514950 1163 ntBASIC14.76□□□□□ -0.05
LDB3O75112 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.76□□□□□ -0.05
LDB3O75112 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.76□□□□□ -0.05
LDB3O75112 AC092337.1-201ENST00000568699 1129 ntBASIC14.76□□□□□ -0.05
LDB3O75112 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 MIR4745-201ENST00000577608 62 ntBASIC14.76□□□□□ -0.05
LDB3O75112 RN7SL204P-201ENST00000582831 262 ntBASIC14.76□□□□□ -0.05
LDB3O75112 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 AC009118.2-201ENST00000613275 655 ntBASIC14.76□□□□□ -0.05
LDB3O75112 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.76□□□□□ -0.05
LDB3O75112 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 SSR4P1-203ENST00000599569 2260 ntBASIC14.76□□□□□ -0.05
LDB3O75112 AC087481.3-201ENST00000602886 1894 ntBASIC14.76□□□□□ -0.05
LDB3O75112 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.75□□□□□ -0.05
LDB3O75112 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LDB3O75112 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.75□□□□□ -0.05
LDB3O75112 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.75□□□□□ -0.05
LDB3O75112 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.75□□□□□ -0.05
LDB3O75112 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 LINC02560-201ENST00000596379 459 ntBASIC14.75□□□□□ -0.05
LDB3O75112 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.75□□□□□ -0.05
LDB3O75112 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.75□□□□□ -0.05
LDB3O75112 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LDB3O75112 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
LDB3O75112 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
LDB3O75112 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
LDB3O75112 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LDB3O75112 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LDB3O75112 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
LDB3O75112 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LDB3O75112 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms