Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 TCAF2P1-201ENST00000291129 2421 ntBASIC13.85□□□□□ -0.19
LMX1BO60663 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.85□□□□□ -0.19
LMX1BO60663 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.85□□□□□ -0.19
LMX1BO60663 REXO1L1P-202ENST00000608646 1974 ntBASIC13.85□□□□□ -0.19
LMX1BO60663 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.84□□□□□ -0.19
LMX1BO60663 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.84□□□□□ -0.19
LMX1BO60663 AC105233.2-201ENST00000523697 349 ntBASIC13.84□□□□□ -0.19
LMX1BO60663 AF228730.5-201ENST00000530288 346 ntBASIC13.84□□□□□ -0.19
LMX1BO60663 ALG1L8P-201ENST00000533887 760 ntBASIC13.84□□□□□ -0.19
LMX1BO60663 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.84□□□□□ -0.19
LMX1BO60663 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 AC084121.4-201ENST00000641598 221 ntBASIC13.84□□□□□ -0.19
LMX1BO60663 AF228730.8-201ENST00000642140 221 ntBASIC13.84□□□□□ -0.19
LMX1BO60663 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
LMX1BO60663 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.84□□□□□ -0.19
LMX1BO60663 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LMX1BO60663 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
LMX1BO60663 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
LMX1BO60663 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
LMX1BO60663 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.83□□□□□ -0.19
LMX1BO60663 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LMX1BO60663 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.83□□□□□ -0.19
LMX1BO60663 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LMX1BO60663 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 AC142381.1-201ENST00000426099 345 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 RNA5SP410-201ENST00000516285 106 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms