Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DNAJB3-201ENST00000446806 729 ntBASIC15.13■□□□□ 0.01
SLC28A1O00337 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.13■□□□□ 0.01
SLC28A1O00337 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.13■□□□□ 0.01
SLC28A1O00337 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.13■□□□□ 0.01
SLC28A1O00337 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.13■□□□□ 0.01
SLC28A1O00337 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SLC28A1O00337 AC003101.2-201ENST00000612557 442 ntBASIC15.13■□□□□ 0.01
SLC28A1O00337 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SLC28A1O00337 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 FAM45BP-202ENST00000592932 1624 ntBASIC15.13■□□□□ 0.01
SLC28A1O00337 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC28A1O00337 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.13■□□□□ 0.01
SLC28A1O00337 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC28A1O00337 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC28A1O00337 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SLC28A1O00337 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 FAM58DP-201ENST00000428076 619 ntBASIC15.12■□□□□ 0.01
SLC28A1O00337 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 BANF1P1-201ENST00000553684 263 ntBASIC15.12■□□□□ 0.01
SLC28A1O00337 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC28A1O00337 AL513210.1-201ENST00000629608 234 ntBASIC15.12■□□□□ 0.01
SLC28A1O00337 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.12■□□□□ 0.01
SLC28A1O00337 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC28A1O00337 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 LINC02228-204ENST00000642115 2962 ntBASIC15.12■□□□□ 0.01
SLC28A1O00337 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC28A1O00337 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
SLC28A1O00337 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms