Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.89□□□□□ -0.03
UPK1AO00322 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.89□□□□□ -0.03
UPK1AO00322 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.89□□□□□ -0.03
UPK1AO00322 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
UPK1AO00322 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
UPK1AO00322 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.88□□□□□ -0.03
UPK1AO00322 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.88□□□□□ -0.03
UPK1AO00322 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
UPK1AO00322 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.88□□□□□ -0.03
UPK1AO00322 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 AL139400.1-201ENST00000366220 510 ntBASIC14.88□□□□□ -0.03
UPK1AO00322 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 SPDYE17-201ENST00000412399 783 ntBASIC14.88□□□□□ -0.03
UPK1AO00322 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
UPK1AO00322 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.88□□□□□ -0.03
UPK1AO00322 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.88□□□□□ -0.03
UPK1AO00322 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 AC109322.1-201ENST00000524499 1264 ntBASIC14.88□□□□□ -0.03
UPK1AO00322 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.88□□□□□ -0.03
UPK1AO00322 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.88□□□□□ -0.03
UPK1AO00322 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 AC069262.1-201ENST00000539058 672 ntBASIC14.88□□□□□ -0.03
UPK1AO00322 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.88□□□□□ -0.03
UPK1AO00322 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 AJ011931.1-201ENST00000618749 2492 ntBASIC14.88□□□□□ -0.03
UPK1AO00322 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
UPK1AO00322 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.88□□□□□ -0.03
UPK1AO00322 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
UPK1AO00322 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.87□□□□□ -0.03
UPK1AO00322 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 AC104581.4-201ENST00000623126 3052 ntBASIC14.87□□□□□ -0.03
UPK1AO00322 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 AC139749.1-202ENST00000617529 3139 ntBASIC14.87□□□□□ -0.03
UPK1AO00322 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.87□□□□□ -0.03
UPK1AO00322 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.87□□□□□ -0.03
UPK1AO00322 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 TSEN15P1-201ENST00000423257 515 ntBASIC14.87□□□□□ -0.03
UPK1AO00322 MTND6P24-201ENST00000440466 518 ntBASIC14.87□□□□□ -0.03
UPK1AO00322 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.87□□□□□ -0.03
UPK1AO00322 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
UPK1AO00322 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
UPK1AO00322 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.87□□□□□ -0.03
UPK1AO00322 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
UPK1AO00322 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
UPK1AO00322 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
UPK1AO00322 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms