Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.29■□□□□ 0.04
PKP4Q99569 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 MIR770-201ENST00000390219 98 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 MRPS18AP1-201ENST00000414458 589 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 AC015922.1-201ENST00000421102 1152 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 AC114501.2-201ENST00000439631 535 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.29■□□□□ 0.04
PKP4Q99569 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.29■□□□□ 0.04
PKP4Q99569 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.29■□□□□ 0.04
PKP4Q99569 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 AC004840.1-201ENST00000636359 365 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
PKP4Q99569 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 DBET-201ENST00000630918 3363 ntBASIC15.29■□□□□ 0.04
PKP4Q99569 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.29■□□□□ 0.04
PKP4Q99569 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.28■□□□□ 0.04
PKP4Q99569 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PKP4Q99569 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PKP4Q99569 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.28■□□□□ 0.04
PKP4Q99569 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.28■□□□□ 0.04
PKP4Q99569 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 AC135586.1-201ENST00000539323 574 ntBASIC15.28■□□□□ 0.04
PKP4Q99569 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.28■□□□□ 0.04
PKP4Q99569 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.28■□□□□ 0.04
PKP4Q99569 TMBIM7P-203ENST00000641617 1718 ntBASIC15.28■□□□□ 0.04
PKP4Q99569 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKP4Q99569 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PKP4Q99569 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 BTBD7P1-201ENST00000447253 1453 ntBASIC15.27■□□□□ 0.04
PKP4Q99569 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.27■□□□□ 0.04
PKP4Q99569 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PKP4Q99569 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.27■□□□□ 0.04
PKP4Q99569 PPT1-215ENST00000641471 2368 ntBASIC15.27■□□□□ 0.04
PKP4Q99569 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.27■□□□□ 0.04
PKP4Q99569 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.27■□□□□ 0.04
PKP4Q99569 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKP4Q99569 AC073347.1-201ENST00000421633 2643 ntBASIC15.27■□□□□ 0.04
PKP4Q99569 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms