Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC007541.1-201ENST00000570282 1469 ntBASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 BNIP3P1-202ENST00000550043 1585 ntBASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP4CQ96CF2 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 SPDYE19P-201ENST00000338590 713 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 SPTLC1P1-201ENST00000447199 261 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 AC004461.2-201ENST00000629517 803 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 AF228730.6-201ENST00000641497 218 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 AC084121.3-201ENST00000641716 218 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 AC105233.6-201ENST00000642093 218 ntBASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP4CQ96CF2 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AC104640.1-201ENST00000562617 2109 ntBASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms