Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 CEND1P1-201ENST00000451006 455 ntBASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 PHKG1P2-201ENST00000457537 863 ntBASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 RARRES2P9-201ENST00000565168 469 ntBASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLHC1Q8NHS4 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 ACTG1P14-201ENST00000446382 1122 ntBASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 MTDHP5-201ENST00000598980 586 ntBASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLHC1Q8NHS4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 MYO15B-237ENST00000642007 4893 ntBASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 AC005237.2-201ENST00000434368 219 ntBASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 MKNK2P1-201ENST00000437526 628 ntBASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.12■□□□□ 0.01
CLHC1Q8NHS4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms