Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 FAM8A3P-201ENST00000427218 844 ntBASIC18.96■□□□□ 0.63
VPS53Q5VIR6 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 RNA5SP421-201ENST00000516864 134 ntBASIC18.95■□□□□ 0.62
VPS53Q5VIR6 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS53Q5VIR6 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AC144831.1-201ENST00000573312 2656 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AC114501.2-201ENST00000439631 535 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 RPL13P2-201ENST00000440687 659 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 SDHAP3-202ENST00000515467 728 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AJ011932.1-201ENST00000621707 465 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 AC090616.6-203ENST00000579186 1945 ntBASIC18.94■□□□□ 0.62
VPS53Q5VIR6 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms