Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC093724.1-201ENST00000448659 1027 ntBASIC11.87□□□□□ -0.51
FOXA3P55318 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC11.87□□□□□ -0.51
FOXA3P55318 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.87□□□□□ -0.51
FOXA3P55318 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC11.87□□□□□ -0.51
FOXA3P55318 MIR5100-201ENST00000579544 119 ntBASIC11.87□□□□□ -0.51
FOXA3P55318 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC11.87□□□□□ -0.51
FOXA3P55318 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.87□□□□□ -0.51
FOXA3P55318 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.87□□□□□ -0.51
FOXA3P55318 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
FOXA3P55318 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.87□□□□□ -0.51
FOXA3P55318 CICP20-201ENST00000443330 2801 ntBASIC11.87□□□□□ -0.51
FOXA3P55318 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC11.86□□□□□ -0.51
FOXA3P55318 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 OS9-207ENST00000439210 1946 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 MED16-201ENST00000269814 1199 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.86□□□□□ -0.51
FOXA3P55318 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA3P55318 TOB2P1-201ENST00000469761 992 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA3P55318 PNN-202ENST00000553331 656 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA3P55318 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 AC139887.3-201ENST00000568585 713 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 MIR3909-201ENST00000579518 119 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.86□□□□□ -0.51
FOXA3P55318 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 AC092329.2-201ENST00000598402 547 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 AC097493.4-201ENST00000641197 219 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
FOXA3P55318 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 AC140479.7-201ENST00000636301 2332 ntBASIC11.86□□□□□ -0.51
FOXA3P55318 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.86□□□□□ -0.51
FOXA3P55318 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
FOXA3P55318 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC11.86□□□□□ -0.51
FOXA3P55318 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC11.86□□□□□ -0.51
FOXA3P55318 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms