Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.23■□□□□ 0.19
NEK3P51956 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.23■□□□□ 0.19
NEK3P51956 KRT8P12-202ENST00000472924 1397 ntBASIC16.23■□□□□ 0.19
NEK3P51956 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NEK3P51956 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.23■□□□□ 0.19
NEK3P51956 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 SNX18-202ENST00000343017 3140 ntBASIC16.22■□□□□ 0.19
NEK3P51956 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.22■□□□□ 0.19
NEK3P51956 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.22■□□□□ 0.19
NEK3P51956 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.22■□□□□ 0.19
NEK3P51956 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
NEK3P51956 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NEK3P51956 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 CICP13-201ENST00000422015 2789 ntBASIC16.21■□□□□ 0.19
NEK3P51956 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 AC138035.3-201ENST00000622706 2791 ntBASIC16.21■□□□□ 0.19
NEK3P51956 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 AP003680.1-201ENST00000598970 3660 ntBASIC16.21■□□□□ 0.19
NEK3P51956 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
NEK3P51956 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
NEK3P51956 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.21■□□□□ 0.19
NEK3P51956 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.21■□□□□ 0.19
NEK3P51956 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.21■□□□□ 0.19
NEK3P51956 AC245100.5-201ENST00000452108 331 ntBASIC16.21■□□□□ 0.19
NEK3P51956 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.21■□□□□ 0.19
NEK3P51956 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.21■□□□□ 0.19
NEK3P51956 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.21■□□□□ 0.19
NEK3P51956 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.21■□□□□ 0.19
NEK3P51956 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.21■□□□□ 0.19
NEK3P51956 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
NEK3P51956 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
NEK3P51956 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.21■□□□□ 0.18
NEK3P51956 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NEK3P51956 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NEK3P51956 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NEK3P51956 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.21■□□□□ 0.18
NEK3P51956 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
NEK3P51956 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NEK3P51956 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
NEK3P51956 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.2■□□□□ 0.18
NEK3P51956 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
NEK3P51956 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms