Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SOX2P48431 LINC00528-201ENST00000600723 2160 ntBASIC13.89□□□□□ -0.19
SOX2P48431 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 AC148477.4-201ENST00000613430 1793 ntBASIC13.89□□□□□ -0.19
SOX2P48431 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.89□□□□□ -0.19
SOX2P48431 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.89□□□□□ -0.19
SOX2P48431 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.89□□□□□ -0.19
SOX2P48431 AC018845.2-201ENST00000568326 409 ntBASIC13.89□□□□□ -0.19
SOX2P48431 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.89□□□□□ -0.19
SOX2P48431 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.89□□□□□ -0.19
SOX2P48431 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 AL691432.3-201ENST00000621860 400 ntBASIC13.89□□□□□ -0.19
SOX2P48431 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.89□□□□□ -0.19
SOX2P48431 AC004877.2-201ENST00000623941 599 ntBASIC13.89□□□□□ -0.19
SOX2P48431 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SOX2P48431 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SOX2P48431 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
SOX2P48431 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
SOX2P48431 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX2P48431 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
SOX2P48431 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 AC007292.2-201ENST00000593524 1812 ntBASIC13.88□□□□□ -0.19
SOX2P48431 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX2P48431 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
SOX2P48431 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.88□□□□□ -0.19
SOX2P48431 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX2P48431 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX2P48431 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 AL031008.1-201ENST00000619963 541 ntBASIC13.88□□□□□ -0.19
SOX2P48431 AL161645.1-201ENST00000622716 1255 ntBASIC13.88□□□□□ -0.19
SOX2P48431 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX2P48431 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 AC126365.1-201ENST00000578585 1514 ntBASIC13.88□□□□□ -0.19
SOX2P48431 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
SOX2P48431 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX2P48431 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX2P48431 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms